• Andy Turner's Blog 2007-02 Page

  • [An image of Andy Turner]

  • Blog

  • 2007-03-01

  • 2007-02-27

    • Browsing
      • UPTAP
      • http://www.worldmapper.org/
    • SoG
      • Preparation for teaching on GEOG5060 next week
        • Skimmed through Lecture Six Slides
          • Noticed that Steve has written there that I am to lecture on Geomatics and Grids (Not to be confused with ArcGIS Grid)
          • Emailed Steve to let him know I can deliver the course as before.
      • Noticed a Virus event on Scan Enterprise: The file C:\temp\output1172508755843 is infected with the Exploit-ObscuredHtml Trojan. Undetermined clean error, quarantine failed. Detected using Scan engine version 5100 DAT version 4970.(from GEO-J20 IP 129.11.93.20 user DS\geoagdt running VirusScan Enter 8.0 OAS)
      • UPTAP meeting on 2007-03-21 to 2007-03-23 looks interesting...
      • Linda See came asking about Simon Jepps work for GEOG5060
        • His blog page for 2006 is still there, but I don't recall seeing any work...
        • I think Linda asked about this before...
    • MoSeS / NCeSS e-Infrastructure
      • Meeting
        • Andy Turner's NCeSS e-Infrastructure project meeting 2006-02-27 Web Page
      • Justin Keen has a new web page which I linked from Andy Turner's MoSeS Project Page
  • 2007-02-26

    • Filled out an ACCELERATING TRANSITION TO VIRTUAL RESEARCH ORGANISATION IN SOCIAL SCIENCE survey on eInfrastructure for Julia Lane from (http://www.norc.org/)
    • Updated my UK eScience certificate
    • Browsing
      • Rural Evidence Research Centre
      • Paul Taylor
      • The Open Knowledge Foundation
      • frot is Jo Walsh's home on the net
      • Proposed UK Geographic Information Strategy: Local Government Association Policy Position
    • SoG
      • Wrote a simple program to scrape a web page for Gary one of Linda's students
    • CCG
      • Tried to update http://www.ccg.leeds.ac.uk/contact/ but don't have enough permission... Need to get Andy Evans to do something about this... He has :) The information is updated!
    • NCeSS e-Infrastructure
      • Preparation for meeting toworrow
        • Is Mark around? I've emailed...
        • Emailed Louise Dyson about Human Resources... she got back to me... We are at the start of the process I think.
        • Mike Daw called, he and Kenny Baird are arriving about 10am tomorrow. Kenny is to talk to us about documentation and training.
  • 2007-02-21

    • Events
      • Preparation for NSF-ESRC
    • Browsing
      • http://www.gigateway.org.uk/
    • SoG
      • Item for SoG News
        • Andy Turner is heading to a first Distributed Systems Online (http://dsonline.computer.org/) Games and Simulation Topic Area (http://dsonline.computer.org/portal/pages/dsonline/topics/gas/gas_2.html) meeting, 2007-03-01 and 2007-03-02 in Los Angeles, USA. See http://www.geog.leeds.ac.uk/people/a.turner/organisations/DSOnline/GamingAndSimulation/ for more details of this meeting and Andy's work on the topic area. The topic area is just getting going, but please bear it in mind when publishing research on this area. The subtitle "Applications for Entertainment, Education, and Modeling" gives you some idea of what we are focussing on, but we welcome all contributions related to game and simulation technology.
    • CSAP
      • Alison sent an email:
        • For those of you not at the CSAP meeting yesterday, the agenda of future meetings will be determined by each member of the group in turn; this will allow everyone to set an agenda that interests them! I propose to modify this slightly by assigning two people to set and chair the meetings, a combination of academics and PGs/Postdocs.
        • I'll compile a list of pairings with dates, please indicate to me if you are happy with this and we'll take it from there!
      • I replied:
        • Happy, only, I would like us to start putting material from these CSAP meetings online, linked from the CSAP home page directly. A proposed agenda should appear first, after the meeting the agenda and some notes which link to any digital copies of presented material. I think Steven should have a hand in this, but again I think it is something we all should practice to develop skills.
      • Alison replied
        • I agree with all of what you say - I'm currently typing up some brief notes - mainly with action points so we don't forget what people have agreed to do. I have referenced your blog as a more detailed account of the meeting :)
      • Wow! Alison read yesterdays blog entry on the CSAP Business Meeting
      • It is time to publish Andy Turner's CSAP web page
    • GeoLinking IE
      • Chat with Chris
        • Checking Paul is set for the meeting on Friday
        • In meeting with Richard Sinnott on monday, they did a demo of portal/portlet authentication using Shibboleth
        • Their portal is based on GridSphere like ours so this could make it really easy for us to adopt the security as they've worked it out.
        • We'll probably need to get a UK Shibboleth account, a bit like an ATHENS X509 account.
        • There should be an identity manager at Leeds
        • John Watt from Nesc will be joining the teleconference :)
        • Want to go through the latest GLS documentation with Paul.
        • Most of the meeting on Friday will be about the OGC process.
        • Want to identify who is working on the same thing GLS clients as us in the IE
      • Meeting with Paul
        • http://portal.opengeospatial.org/wiki/twiki/bin/view/GEOLINKie
        • http://portal.opengeospatial.org/wiki/twiki/bin/view/GEOLINKie/GeolinkIEServices
        • The following link not working http://portal.opengeospatial.org/wiki/twiki/pub/GEOLINKie/GeolinkIESpec/GDASGLS20070216.zip
  • 2007-02-20

    • Browsing
      • http://en.wikipedia.org/wiki/Leet
      • http://www.muller-godschalk.com/acronyms.html
      • http://en.wikipedia.org/wiki/List_of_Internet_slang
      • http://en.wikipedia.org/wiki/MUD
      • http://www.gnu.org/software/wget/
      • http://gisagents.blogspot.com/
    • Meeting with Paul
      • GeoLinking IE
        • Asked Peter Schut to add Paul to the GeoLinking IE so he can access the twiki : Geolinking Interoperability Experiment WIKI
      • Junaid
        • He is to do a Masters Dissertation with the Distributed Systems Group :)
          • Focus on Security
          • Paul to draft a document on Requirements (standard, advanced)
          • Want Junaid to read up on Security (OWS, DRM, Security WG)
          • Glasgow Portal technology/shibboleth
        • I am to get Junaid set up with OGC portal access
    • GI and GRADE
      • http://edina.ac.uk/projects/grade/status2.html
      • Property
        • House prices
          • Land Registry data available from http://www.houseprices.co.uk/
            • http://www.houseprices.co.uk/copyright/
            • http://www.houseprices.co.uk/robots.txt
          • http://www.mouseprice.com/
        • Business
          • http://www.voa.gov.uk/
            • http://ratinglists.voa.gov.uk/irl2k5/mainController?action=InitialiseApp&listYear=2005&lang=E
            • http://ratinglists.voa.gov.uk/irl2k5/mainController?action=BillingAuthoritySearch LEEDS
            • http://ratinglists.voa.gov.uk/irl2k5/mainController?action=RefineSearch&bacode=4720&mode=&baname=LEEDS&lang=E&listYear=2005&startRow=0&maxRow=20 Select supermarket
            • http://ratinglists.voa.gov.uk/irl2k5/mainController?action=DetailedSearchRating
        • http://www.landregisteronline.gov.uk
        • http://www.landsearch.net/landregistry/
        • http://www.landreg.gov.uk/
      • Health
        • http://www.nhs.uk/
        • http://www.nhs.uk/England/Doctors/Default.aspx
        • Good chance this can be exposed as Web Services? Maybe Robin Smith has a contact?
    • Events
      • Applications and Challenges of High Performance and Grid Computing, Great/Little Woodhouse Rooms, University House, University of Leeds, 2007-03-12 12:15-16:30.
      • There is a SIG1 International Seminar on Land Use and Transportation (LUT) in Seoul, Korea, 2007-03-16.
      • Preparation for NSF/ESRC Agenda Setting Workshop on Agent-Based Modeling of Complex Spatial Systems 14th to 16th April 2007, Santa Barbara USA.
        • Drafting a Personal Perspective on the field, about its problems, about its potential about particular models, about data infrastructures for models, and about any topic for discussion.
        • Needs to be sent to Mike ASAP as the workshop to be organised around these statements
    • CSAP Business Meeting
      • People
        • Hazel Parry, Linda See, Melanie Tomlintz, Steven Stone (cluster support secretary), Adam Dennett, Andy Evans, Andy Turner, Helen Durham, Paul Norman, Kimberley Procter, Graham Clarke, Mark Birkin, Alison Heppenstall (Chair)
      • Cluster support
        • What can Steven do for us?
        • David Hughes is Steven's staff manager and is to be asked if Steven's role can be extended to take the minutes of such meetings
          • If not then this is a skill (like chairing a meeting), so perhaps we can take it in turns
        • What can we do for Steven?
      • Web
        • Andy T to ask webmaster to organise the news that goes into the SoG newsletter to be linked from the CSAP latest section of the web page as news
          • This can be done by tagging each news section of the newsletter and linking from there.
            • It would also be good to have a track back to old news
            • One way to do this is to have a single link on the CSAP page that doesn't change, but which points to the latest SoG News and have the latest SoG News move in time to a dated file. Changing it's link to old news as it goes...
        • Andy E to ensure everyone can edit their home page
      • ASAP update
        • New cover design
      • CSAP meeting organisation
        • Paul to take over from Phil organising internal seminar programme
        • Take it in turns to chair and set agenda for meeting
        • Regular time for meetings?
          • Wednesday 12-2pm
          • Let's try not to clash with other cluster meeting
          • Use of outlook calendar?
        • Invite the director of research
        • Next meeting
          • 7th March
          • Graham Clarke to draft agenda and chair
          • Invite new head of school to say something about what does he want us to do...
      • AoB
        • Finance
          • Mark thinks CSAP is flush to the tune of about £15K thanks mainly to John Stillwell :)
          • Steve to keep a record of what cluster money has been spent and on what
          • Dianna request for sponsorship of event approved
          • Linda has a data request for local houseprice data for Leeds
            • Land registry data apparently can't be obtained for unit postcodes very easily
            • Once we bought it we can give it to anyone
            • I suggested we do a bit of research and look to put it on GRADE :)
        • Social
          • Linda to throw out some dates
        • Teaching cluster associate with PhD positions
          • Is there a problem with non-eu v eu in terms of finance?
          • Mark has 16 applications
            • He wants help with selection/short listing
            • Interviews 12 march
          • Workload
            • We have 40% FTE to take loads off us
            • There are some strange rules about what they are allowed to do...
            • What jobs do we want them to do?
              • Marking?
  • 2007-02-19

    • GRADE
    • Richard Kingston pointed out that the web services in digimap are available.
      • We should probably try to use this for MoSeS.
  • 2007-02-17

    • Working on a Saturday!
      • Not done this for a while...
      • Not planning on working long either...
      • Trying to catch up on a few things...
        • GRADE
        • MoSeS
          • Population Initialisation
            • Results for optimising just on age80AndOver look OK
              • This means that there probably isn't a logic problem with the optimisation.
              • Set a run going on the Beowulf that weights the optimisation such that age80AndOver is 1000 times more important than before...
      • Erling
        • Spurred on by Pippa and Mike, he is going to attempt some modelling work for his PhD :)
          • This could be good, but we should be realistic about how much can be done.
          • Starting to program in Java now and build a model and results when his deadline is in 2007 is a tough call.
          • Still PhD or no PhD, this could be the best thing Erling has done since learning one of the first Object Orientated languages SIMULA which he says he did back in the dark ages...
          • I showed Erling Netbeans and the relevant bits of my grids and geomorphometrics code.
          • I explained he could base his work on this and get my help.
          • We mused on the benefits of hexagonal rasters as opposed to squares.
          • I explained that it is best to start simple at this stage and build in complexity over time.
          • So, flow accumulation on a rock hard landscape with no infiltration with even rainfall/evaporation and friction on any slope.
          • We did not discuss 3D versus 2D, but I did explain that a consideration of the assumptions of a chosen framework would be essential.
      • Although I did a few hours work, I was really only here to play in a squash tournament.
  • 2007-02-16

    • GeoLinking IE and NCeSS e-Infrastructure
      • Call from Chris Higgins
        • In the proposal of the NCeSS e-Infrastructure project it was written that SEE-GEO (part of the JISC OGC Grid Collision) would provide us with some help on security.
        • Chris Higgins is going with Fiona Culloch from SDDS to a technical meeting on Monday with Richard Sinnott from NeSC.
          • Bascially this is about portlet security and they will mention the work we are doing.
          • Richard is thought to be keen to do some work and hopefully will contact Paul with regard security in our portlets.
    • Published Andy Turner's GRADE Web Page
    • GRADE
    • Browsing
      • NGS JSDL Application Repository / Job Submission Portal
      • http://home.badc.rl.ac.uk/lawrence/blog/2007/02/08/ippc-data.org
      • Dimitris Kavroudakis
      • http://www.nearby.org.uk/
    • MoSeS
      • Run to optimise on Age80AndOver only
        • Something wierd happened with the output...
        • I think I was running twice, once in the profiler and the output file was mangled...
        • Netbeaans5.5 profiler is nice though... Thanks Mike for installing this on passing :)
    • SoG
      • Helping Zia and ISS try to work out what is going wrong with SAMBA shares
      • Mike installing some netbeans things for me...
  • 2007-02-15

    • DSOnline
      • Edited about page
      • Investigating events calendar
    • GRADE
    • Browsing
      • Implementing rendering support for JGrass maps
      • http://trove4j.sourceforge.net/
      • http://sourceforge.net/projects/trove4j/
      • http://jakarta.apache.org/commons/io/
      • http://jakarta.apache.org/commons/lang/
      • http://en.wikipedia.org/wiki/Leeds
      • http://en.wikipedia.org/wiki/Sheffield
      • http://en.wikipedia.org/wiki/Doncaster
        • http://en.wikipedia.org/wiki/Jonti_Picking
        • http://en.wikipedia.org/wiki/Dandong
      • http://en.wikipedia.org/wiki/Aylesbury
        • http://en.wikipedia.org/wiki/Sir_Henry_Floyd_Grammar_School
      • Free Our Data: Make taxpayers' data available to them
      • http://publicgeodata.org/
      • http://giscussions.blogspot.com/
      • http://technology.guardian.co.uk/weekly/
      • Geo-collaboration and P2P Geographic Information Systems: Current Developments and Research Challenges
    • UoL
      • http://www.comp.leeds.ac.uk/jubilee/
      • SoG
        • Helping Zia and ISS try to work out what is going wrong with SAMBA shares
        • Developing an "intellectual agenda":
          • What is an "intellectual agenda"?
            • Information Systems and Technology in Organisations and Society (ISTOS) Intellectual Agenda
            • Searching for "intellectual agenda" with search engines doesn't suggest that this is a common term on the Web.
            • There is no wikipedia page on Intellectual_Agenda as yet.
              • Is this a defining moment... er... not yet... still trying to work out what it is yet... and then need to think if the combined words in the term is worthy of definition.
            • Intellectual
              • An intellectual is a person who uses his or her intellect to work, study, reflect, speculate on, or ask and answer questions with regard to a variety of different ideas.
              • Having read the sections on Intellectualism and Academics and public intellectuals I am coming to the conclusion that my intellectuial agenda is one of a computational geographer, i.e the application of the computational science paradigm to the problems of geography. Thank you Stan!
            • Agenda
              • Basically this means actions to be undertaken.
          • So I have an "intellectual agenda" it is exposed as my Web Content in particular in my Research Interests Web Page
    • NCeSS e-Infrastructure
      • Emailed David Hughes to work out what is happening with finance to help with detailing the project plan.
        • He phoned and doesn't know anything about it... He is checking with Susan Illingworth...
    • MoSeS
      • Age only optimisation stuck in the final stages possibly due to overload of node201.
        • This could be an IO problem?
      • Improve reporting of results and do census data generalisation as Martin wants...
      • NTF Strategi data: Retrieving data: Job number 176786110c4ed2ec2k.
    • Tried to add a comment to Free Our Data: the blog: 96
      • I used to think information management was more organised and information was being integrated far more than what I now think. It seems so obviously the right thing to do for government and to improve public services and our environment. I appreciate that there is some need for security and control over access to information. But I agree with my friend and mentor Stan Openshaw when he suggested that not integrating and analysing data for epidemiology is wrong - he actually went further and called it "Crime" and that those preventing the work were accomplices and also criminal... I know we can never prove that we could have saved lives by being able to do the work with better data and access... If we the public are the government as Judy suggests, then we want access to the data to help do the work.
    • Added Miles Hill, Farm Hill amd Beck Hill as links to Leeds Areas on http://en.wikipedia.org/wiki/Leeds
    • GRADE
  • 2007-02-14

    • GRADE
    • Browsing
      • Developing the UK’s e-infrastructure for science and innovation
    • Events
      • Real Life Methods Training Workshop: Geodemographics and the Social Sciences
      • Sorted accomodation for DS Online meeting.
    • SoG
      • EGC Seminar
        • Tropospheric CO2 from space: monitoring from infrared sounders and link to biomass burning
          • Cyril Crevoisier
          • There are not dense and well distributed observations and sensor networks in the tropics measuring atmospherics.
          • Cyril measuring 5-15km in atmosphere (in the troposphere?)
          • Infra red and microwave channels
          • 1% change in Co2 results in a 0.04% change in the signal... so very hard to detect...
          • Using supervised Neural Networks :)
          • Has need for cloud/aerosol masks
          • Believes error less over the tropics as temperature more constant...
          • I got confused about whether the signals were reliable over land... I got the impression they weren't, but I was confused...
          • HALO European project
          • There is a 25 year archive to be processed for this signal using Cyrils newly developed retrieval method
          • Thanks Cyril :)
      • We are hosting a Penal Spaces Workshop
        • The workshop is really about "production of social and personal space in prisons in the United Kingdom, the Netherlands and the United States".
        • This seems to be more sociology than geography sigh!
        • It would have been good if there was a component about where there are and where to plan prisons of different types, what their charcateristics are etc...
        • The location and characteristics of prisons and their populations and change over time are interesting geographical topics.
        • Indeed for the MoSeS demographic model we are developing, we should be having people moving in and out of prisons (as with other communal establishments)...
      • School Staff Meeting
        • Asked Mike if we can compare web access stats with other geography departments
          • I am to expect a 1-2hr chat with a reviewer between April and June as part of the Staff Review and Development Scheme
          • This might be useful for numerous reasons.
          • I hope they are all as good as us at publishing their stats...
    • MoSeS
      • Took another look at digimap to get some data for map prettifying...
      • Acquiring Strategi as NTF
  • 2007-02-13

    • Browsing
      • http://java.sun.com/developer/onlineTraining/
      • http://simgrid.gforge.inria.fr/
    • UoL
      • Emailed webmaster to ask for an ELGG account...
    • GeoLinking IE
      • Pick of Google Alert 1
        • Jonas Johansson (2006) Standardised Access to Geospatial Information and Services - Towards a European Infrastructure for Geospatial Information. Master's Thesis Project, Department of Computing Science, Umeå University.
        • http://wms1.agr.gc.ca/gdas/gdas.phtml
        • http://www.gogeo.ac.uk/geoPortal10/EDINA_GI_Standards_Report.doc
    • Sustainable Uplands beyond MUDSES
      • Nanlin came and chatted about the proposal stage of a visualisation project based on MUDSES.
      • I advised Nanlin to write down her visualisation ideas and to liase through Mark to get the others to do the same.
      • MUDSES is not forging the collaborations I had hoped.
      • Too much writing and not enough reading and collaboration in my opinion.
      • Nanlin asked for the details of our conversation to remain confidential. This is a shame as I wanted to try and pin things down in an open way. Not a name and shame, but a key to collaboration.
    • GRADE
  • 2007-02-12

    • Browsing
      • Google Alerts (BETA)
      • Levent Yilmaz
      • The digital national (Great Britain) framework
      • OpenLayers
    • DS Online
      • Simulation links
        • Publciations
          • International Journal of Simulation and Process Modelling (IJSPM) ISSN (Online): 1740-2131 - ISSN (Print): 1740-2123
        • Events
          • ECM_MAI 2007 - EXTENDING COMPUTATIONAL COGNITIVE MODELLING TO ISSUES OF MULTI-AGENT INTERACTION in conjunction with ICAI'07
          • Intelligent agents, artificial intelligence, and simulation gaming (Call for papers) for a symposium, issue of Simulation & Gaming: An Interdisciplinary Journal of Theory, Practice, and Research
          • 2007 Summer Computer Simulation Conference (SCSC'07) “Moving Towards the Unified Simulation Approach” (Call For Papers)
          • AI, Simulation and Planning in High Autonomy Systems (AIS) Conceptual Modeling and Simulation (CMS) (Call for Participation)
    • SoG
      • Web Pages
        • Getting web pages sorted takes time, but their importance should not be under-estimated.
          • CSAP projects - Contact David to get NCeSS e-Infrastructure project linked and correct information for other projects...
          • Emailed Alison and Dianna to get web content as an item on the forthcoming CSAP business meeting agenda.
          • Belinda's web pages are coming along well. A number of broken links should be fixed or removed. It would be good to have an outline of her PhD linked in on there somewhere too. I've tried to encourage Belinda to develop her web pages some more :-)
    • GeoLinking IE
      • Created a comprehensive weekly Google Alert on the topic "GeoLinking geographic information"
    • RELU/MUDSES
      • Emailed Brian and Nanlin: Grade Repository Demonstrator test community > Collection 1: UK Data > Pattern analysis of Scottish Uplands land cover data (10km tiles)
    • MoSeS
      • Moses
      • Age Group only optimisation runs
        • Failure
          • # # An unexpected error has been detected by HotSpot Virtual Machine: # # SIGSEGV (0xb) at pc=0x401569be, pid=2659, tid=1099726016 # # Java VM: Java HotSpot(TM) Client VM (1.5.0_09-b03 mixed mode) # Problematic frame: # V [libjvm.so+0x1289be] # # An error report file with more information is saved as hs_err_pid2659.log # # If you would like to submit a bug report, please visit: # http://java.sun.com/webapps/bugreport/crash.jsp # mpi.MPIException: xdev.XDevException: java.nio.channels.ClosedChannelException at mpi.Comm.send(Comm.java:378) at mpi.Comm.Send(Comm.java:329) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run_SWR_OA_HSARHP_ISARCEP(IndividualCensusBeowulf.java:328) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run(IndividualCensusBeowulf.java:114) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.main(IndividualCensusBeowulf.java:71) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) ... mpi.MPIException: xdev.XDevException: java.nio.channels.ClosedChannelException at mpi.Comm.send(Comm.java:378) at mpi.Comm.Send(Comm.java:329) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run_SWR_OA_HSARHP_ISARCEP(IndividualCensusBeowulf.java:328) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run(IndividualCensusBeowulf.java:114) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.main(IndividualCensusBeowulf.java:71) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:585) at runtime.daemon.JarClassLoader.invokeClass(JarClassLoader.java:111) at runtime.daemon.ThreadedWrapper$1.run(ThreadedWrapper.java:235) at java.lang.Thread.run(Thread.java:595) Caused by: xdev.XDevException: java.nio.channels.ClosedChannelException at xdev.niodev.NIODevice.isend(NIODevice.java:1377) at xdev.niodev.NIODevice.send(NIODevice.java:1563) at mpjdev.Comm.send(Comm.java:897) at mpi.Comm.send(Comm.java:370) ... 11 more Caused by: java.nio.channels.ClosedChannelException at sun.nio.ch.SocketChannelImpl.ensureWriteOpen(SocketChannelImpl.java:125) at sun.nio.ch.SocketChannelImpl.write(SocketChannelImpl.java:294) at xdev.niodev.NIODevice.eagerSend(NIODevice.java:1693) at xdev.niodev.NIODevice.isend(NIODevice.java:1372) ... 14 more mpi.MPIException: xdev.XDevException: java.nio.channels.ClosedChannelException at mpi.Comm.send(Comm.java:378) at mpi.Comm.Send(Comm.java:329) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run_SWR_OA_HSARHP_ISARCEP(IndividualCensusBeowulf.java:328) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run(IndividualCensusBeowulf.java:114) at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.main(IndividualCensusBeowulf.java:71) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
          • This looks like a problem experienced before...
          • I've emailed the General MPJ mailing list to explain that I will save the logs, run the process again to see if I can replicate the error, then get back to them in due course...
      • Emailed Rob Smith of GOLD to start a MoSeS collaboration conversation
        • Got a reply and all seems good... I should set up our collaboration by developing some web content...
    • GRADE
  • 2007-02-09

    • DS Online
      • Booked my flights from MAN to LAX for upcoming meeting 2006-03-01 2006-03-02
      • Games and Simulation
        • There are many links to be forged between this and other DS Online Topic Areas
          • Agent Based Modeling techniques are often used in simulation:
            • Geographic simulation of ecosystem interactions and/or socio-economic processes is common.
            • In the entertainment and media industry the techniques is also broadly used, especially in film/TV and games.
          • Games and Simulations are often demanding of computational and distributed resources.
    • Browsing
      • http://www.journalofmaps.com/
      • Drumlin map of the western Pennines and southern Vale of Eden, northern England
      • 4th Conference of the European Social Simulation Association (ESSA 2007)
      • http://www.geog.leeds.ac.uk/otherwebs/secse
      • Spatially Embedded Complex Systems Engineering (SECSE)
      • SECSE: Spatially Embedded Complex Systems Engineering
    • SoG
      • Preparation for Upcoming Staff Meeting
        • Read through the documents that were available, not all the links worked
          • Emailed to ask for clarification on "Outputs - Feb 07" document for upcoming Staff Meeting:
            • In Outputs - Feb 07 we have:
              • Birkin, M.H.; Turner, A.G.D.; Wu, M.B. ‘A Synthetic Demographic Model of the UK Population: Progress and Problems’, Proceedings of the Second International Conference on e-Social Science.
              • Birkin, M.H.; Turner, A.G.D.; Wu, M.B., Proceedings of the Second International Conference on e-Social Science.
            • Two points:
              • Wu, M.B. is our own Belinda, so by convention this should be bold.
              • This is either two seperate items in the same proceedings, or it just one item in those proceedings.
                • In my records (http://www.geog.leeds.ac.uk/people/a.turner/publications/ under Articles 2006) there is an item refering to a second abstract submitted as below. I don't know if a revision appeared in the proceedings.
                • Birkin M., Turner A.G.D., Wu B. (2006) Proof of Concept for a Dynamic Simulation Model of the UK Population. Abstract submitted for the Second International Conference on e-Social Science, UK, June (2006-06).
          • Interest in "Recruitment Group Minutes (Core Group)" item 5 on the School Website made me think about web usage statistics
            • It is great that we generate statistics about the SoG Webserver using analog6 and have some record of the past.
            • How can these statistics be used for indicating/measuring our research/teaching profile/performance?
            • SoG Web Access Stats 2000-03-01 to 2000-03-27, 2002-03-01 to 2003-03-05
            • Is all the data we have on this in /weblogs on geogweb? Are there backups with more complete information
    • MoSeS
      • Age Group only optimisation runs
        • The unsatisfactory nature of the Age80AndOver result might be for a reason more complex than just not having an easily findable proportion of male or female individual age80AndOver single households.
          • There may be only small proportions with or without LLTI etc...
          • I think this will be indicated if the results from this run are significantly better fitting for age80AndOver group...
      • I should have emailed Rob Smith of GOLD to start a MoSeS collaboration conversation...
  • 2007-02-08

    • DS Online
      • New version of Games and Simulation Home Page uploaded.
    • UoL
      • Special Edition EBI newsletter
      • SoG
        • MASS meeting :)
          • Stuart Hodkinson talked about the ESRC application "Can City-Regions help to deliver sustainable communities? Affordable housing strategy in the Leeds City-Region"
          • ...
    • OGC Grid Collision
      • Rob Allan pointed my to W3C Semantic Web Interest Group :)
      • W3C Geospatial Incubator Group
      • W3C Geospatial Incubator Group > Geo Vocabulary Update Work
      • Paul's REST presentation slides :)
    • MoSeS
      • Technical Meeting
        • Meeting mainly an excuse so we can take Boa-Hua Mao out to dinner.
        • Andy Turner's MoSeS Technical Meeting 2007-02-08 Web Page
      • Provided EPS files of raster backdrop to Paul with a little metadata.txt file
  • 2007-02-07

    • MoSeS meeting
      • Andy Turner's MoSeS Technical Meeting 2007-02-07 Web Page
    • JISC: The Service Oriented Approach
    • Rob Allan pointed me at the following (I got access using the credentials in his email): Sakai Yahoo Map
    • WUN
      • GIS Academy Virtual Seminar presentation
        • 2007-02-07 Andy Turner's archive location for presentation material
  • 2007-02-06

    • Reading
      • IMA Newsletter February 2007
    • SoG
      • Patrick is interested in International Workshop on Numerical Modelling - Policy Interface (NMPI) 2007 :)
    • MoSeS
      • Population Initialisation for Leeds
        • New result
          • Published new output online and emailed Mark and Martin the URLs:
            • ToyModel_SWR_OA_HSARHP_ISARCEP_0_10_10000_10_100_12_10_MarkOutput2OA
            • ToyModel_SWR_OA_HSARHP_ISARCEP_0_10_10000_10_100_12_10_MarkOutput2MSOA
            • ToyModel_SWR_OA_HSARHP_ISARCEP_0_10_10000_10_100_12_10_MarkOutput2Ward
          • This is an improvement, but there are still problems (results are unsatisfactory).
            • One problem I suspect is to do with the handling of Communal Establishment Population (CEP).
              • I don't think the optimisation is working too well for these, thus results where the OA contains a significant CEP are not good.
        • Processing an OA (either 00DAGG0013, 00DAGH0049 or 00DAFB0058) on the Beowulf resulted in a java.lang.NullPointerException
          • java.lang.NullPointerException
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.addToCountsHSARHP(GeneticAlgorithm.java:4692)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.getFitness_SWR_HSARHP_ISARCEP1(GeneticAlgorithm.java:2762)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.getFitness_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:2654)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.doMutation_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:2225)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.doBreeding_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:1384)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.doOptimisation_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:1170)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.doOptimisation_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:601)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.GeneticAlgorithm.getOptimised_SWR_HSARHP_ISARCEP(GeneticAlgorithm.java:245)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run_SWR_OA_HSARHP_ISARCEP(IndividualCensusBeowulf.java:310)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.run(IndividualCensusBeowulf.java:114)
            • at uk.ac.leeds.ccg.andyt.projects.moses.process.IndividualCensusBeowulf.main(IndividualCensusBeowulf.java:71)
            • at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            • at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
            • at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
            • at java.lang.reflect.Method.invoke(Method.java:585)
            • at runtime.daemon.JarClassLoader.invokeClass(JarClassLoader.java:111)
            • at runtime.daemon.ThreadedWrapper$1.run(ThreadedWrapper.java:235)
            • at java.lang.Thread.run(Thread.java:595)
          • Something wrong with swapping people in CEP?
            • It seems likely the problem is in the mutation...
            • Added some debug and running on PC for these areas... Odd the results generated... Something has changed... Are the Random calls different or is the process slightly modified in the PC version?
          • Need to investigate the HSAR Records for records with AGEH=80:
            • 3.6% of HSAR records are with AGEH=80 which is larger than all other categories...
            • Are there one person households with AGEH=80 both male and female?
              • What proportion of all 80 and over year old HSAR HRP records are these?
                • If this is very low then the chance of pulling the record at random is low, so the way the optimisation works could be very slow...
                • Consider a speed up involving selecting on a smaller set of 80 and over year old HSAR HRP records
    • DSOnline
      • Flights to meeting
        • Should I stop over for the remainder of the OGC TC meeting on the way back to the UK?
          • Need to investigate...
        • £333.00 average per person (total £333.00 ) Fare Rules Outbound from: Manchester (MAN), Manchester Wed 28-Feb-2007 11:00 Flt No. US1597 Operated by: US Airways Economy Departure information to: Los Angeles (LAX), Los Angeles Wed 28-Feb-2007 19:36 Non stop Return from: Los Angeles (LAX), Los Angeles Sun 04-Mar-2007 11:10 Flt No. US1596 Operated by: US Airways Economy Return information to: Manchester (MAN), Manchester Mon 05-Mar-2007 08:55 Non stop
      • Swen asks for about half a page of writing:
        • This is to address:
          1. What I would like the IEEE to achieve (in regard to games & simulation), and
          2. How that could be achieved through IEEE (activities or platforms).
        • The purpose of this activity is for each of to have a clear idea what each of us would like to achieve before we meet 2007-03-01 to 2007-03-02. By sharing this information beforehand we can focus the meeting on defining the common goal and developing a strategy to achieve the common goal.
    • GeoLinking IE
      • Sent an official OK from UoL to Chris so he can get us signed up.
      • Updated Andy Turner's OGC GeoLinkingIE Page
    • WUN
      • First version of Andy Turner's WUN Web Page
      • Preperation for my seminar presentation tomorrow...
  • 2007-02-05

    • Browsing
      • GeoTools Catalog Tutorial
      • The 20th Open Grid Forum - OGF20
      • Software Design, or, why Chandler is going nowhere
      • Maposauraus prepare to meet your doom
      • JGrass and uDig integration
    • Regional Information Sharing Workshop 2007-02-19
      • Registered via the GRADE repository demonstrator home page
    • WUN
      • WUN Global GIS Academy Virtual Seminar 2007-02-07 preperation
        • Revised title: "My PhD research: Spatio-temporal foci"
          • Two part presentation:
            • Road accident research
              • Visualising change at a high level of spatial resolution
              • Conceptual outline / what I am planning to do
    • SoG
      • Sigh! Despite my email to Katy dated 2006-11-24 there is still not even Global land environments since the last interglacial linked from any of:
        • http://www.geog.leeds.ac.uk/people/k.roucoux/linksinfo.html
        • http://www.geog.leeds.ac.uk/people/i.lawson/linksinfo.html
        • http://www.geog.leeds.ac.uk/people/c.tzedakis/linksinfo.html
    • MoSeS
      • Investigating OSMasterMap
        • Digimap Download
          • Digimap use is subject to copyright terms and conditions
          • There are two types of OSMasterMap data:
            • Topography Layer
              • This can only be pulled for areas of 25km2 with Digimap
            • Integrated Transport Network (ITN) Layer
              • I have downloaded a buffer of this covering the Leeds area as GML to see what it's like.
  • 2007-02-02

    • Regional Information Sharing Workshop 2007-02-19
      • Robin Smith emailed to say I am part of an experiment to test some file copying software for GRADE
      • I dutifully emailed Anne Robertson to request registration for the GRADE repository.
      • JISC Information Environment
    • GeoLinking IE
      • Drafted an NCeSS Use Case
      • Emailed Paul and Chris to see if this is along the right lines
    • SoG
      • Erling doesn't think he has enough time to do any modelling now... It is time for him to concentrate on writing up as he wants to submit in September.
    • Browsing
      • GMU CSISS Service WSDL
      • Ontology-driven Automatic Geospatial-Processing Modeling based on Web-service Chaining. Liping Di, Peisheng Zhao, Wenli Yang, Peng Yue. Center for Spatial Information Science and System, George Mason University
      • GeoBrain
      • OGC Newsletter - January 2007
      • Global Spatial Data Infrastructure Association
      • Geospatial Knowledge Grid
      • OnEarth
    • WUN
      • Provided "Visualising change in road accident incidence over time at a high level of spatial resolution: Publication from an abandoned PhD" as a title for Postgraduate WUN Seminar next week on Spatio-temporal GIS to Linda See
  • 2007-02-01

    • Living in a Multi-Core World: Tips for Developers
    • http://en.wikipedia.org/wiki/Multi-core_(computing)
    • Some available WMS and WFS servers
    • OGC Grid Collision
      • Need to draft use case for GeoLinking IE and send to Chris Higgins ASAP
    • SoG
      • Seminar on 'Agent based simulation for dynamic Socio-economics Systems' by Nanlin Jin
        • Nanlin is developing a land-use model similar to FEARLUS as part of Modelling Uncertainty in Dynamic Socio-economic Systems (MUDSES)
        • I think it would be good to build an Agent Based Model incorporating all the actors/agents involved in upland management
          • This includes the farmers, land-owners, policy makers and the scientists
          • This model could be detailed with conflicts and resolution information
          • It would be interesting to model the annoyance of agents, with other agents of the same type and with other agents in general.
          • It was noted that some stakeholders might already be getting annoyed with the researchers
      • Seminar on ‘Ecological mechanisms of global vegetation diversity and global fire patterns’ by Sergey Venevsky
        • Sergey Venevsky: A.M.Obukhov Institute of Atmospheric Physics Russian Academy of Sciences Home Page
        • Nice although low resolution 5 minute or so maps of simulated number of fires for 1974-1994 in Iberian peninsular.
        • SEVER-FIRE global mechanistic fire model
        • Slides from a previous presentation by Sergey Global process-oriented fire model SEVER-FIRE: structure, results, perspectives
        • Sergey Venevsky, Irina Veneskaia (2003) Large-scale energetic and landscape factors of vegetation diversity Ecology Letters 6 (11), 1004–1016. doi:10.1046/j.1461-0248.2003.00527.x
        • Biodiversity Mapping for Protection and Sustainable Use of Natural Resources (BIOMAPS)
        • Modeling of vegetation diversity and a national conservation planning: example of Russia. Dissertation for obtaining academic degree Doktor der Naturwissenschaften (Dr.rer.nat.) in Ecology submitted to Faculty of Mathematics and Sciences of the University of Potsdam by Irina Venevskaia, Potsdam, October 2004
      • Samba still not working as before from my new PC... Maybe I have to do without this...
    • MoSeS
      • Compiled and running with NetBeans 5.5
      • Need to investigate problem with the results...
  • 2007-01-31

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  • Copyright: Andy Turner, University of Leeds