Class Parameters

java.lang.Object
  |
  +--Parameters
Direct Known Subclasses:
BNParameters, GamParameters, RandomParameters
public class Parameters
extends java.lang.Object

Field Summary
protected  double canMin
           
protected  int cnts
           
protected  double hH
           
protected  int maxMC
           
protected  int maxRep
           
protected  int maxSam
           
protected  int meas
           
protected  int minPnt
           
protected  double popMin
           
protected  double simMax
           
protected  int stat
           
protected  double thresh
           
 
Constructor Summary
Parameters()
           
Parameters(double thresh, double popMin, double canMin, double hH, double simMax, int meas, int minPnt, int maxSam, int maxMC, int stat, int maxRep, int cnts)
           
Parameters(java.io.File file)
           
 
Method Summary
 int getBootstrapSampleSize()
           
 int getCounts()
           
 double getMinIncidenceCount()
           
 int getMinPointCount()
           
 double getMinPopSize()
           
 double getMonteCarloRejectionCount()
           
 int getMonteCarloSampleSize()
           
 int getMultipleTestReruns()
           
 Parameters getParameters()
           
 double getRealMonteCarloSampleSize()
           
 double getSignificanceThreshold()
           
 int getStatType()
           
 int getTestType()
           
 void setBootstrapSampleSize(int i)
           
 void setCounts(int i)
           
 void setDefaultParameters()
           
 void setMinIncidenceCount(double d)
           
 void setMinPointCount(int i)
           
 void setMinPopSize(double d)
           
 void setMonteCarloRejectionCount(double d)
           
 void setMonteCarloSampleSize(int i)
           
 void setMultipleTestReruns(int i)
           
 void setParameters(double thresh, double popMin, double canMin, double hH, double simMax, int meas, int minPnt, int maxSam, int maxMC, int stat, int maxRep, int cnts)
           
 void setRealMonteCarloSampleSize(double d)
           
 void setSignificanceThreshold(double d)
           
 void setStatType(int i)
           
 void setTestType(int i)
           
 java.lang.String toString()
           
 void writeParameters(java.io.File file)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

thresh

protected double thresh

popMin

protected double popMin

canMin

protected double canMin

hH

protected double hH

simMax

protected double simMax

meas

protected int meas

minPnt

protected int minPnt

maxSam

protected int maxSam

maxMC

protected int maxMC

stat

protected int stat

maxRep

protected int maxRep

cnts

protected int cnts
Constructor Detail

Parameters

public Parameters()

Parameters

public Parameters(java.io.File file)
           throws java.io.IOException,
                  java.io.FileNotFoundException

Parameters

public Parameters(double thresh,
                  double popMin,
                  double canMin,
                  double hH,
                  double simMax,
                  int meas,
                  int minPnt,
                  int maxSam,
                  int maxMC,
                  int stat,
                  int maxRep,
                  int cnts)
Method Detail

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

getParameters

public Parameters getParameters()

setParameters

public void setParameters(double thresh,
                          double popMin,
                          double canMin,
                          double hH,
                          double simMax,
                          int meas,
                          int minPnt,
                          int maxSam,
                          int maxMC,
                          int stat,
                          int maxRep,
                          int cnts)

setDefaultParameters

public void setDefaultParameters()

getSignificanceThreshold

public double getSignificanceThreshold()

setSignificanceThreshold

public void setSignificanceThreshold(double d)

getMinPopSize

public double getMinPopSize()

setMinPopSize

public void setMinPopSize(double d)

getMinIncidenceCount

public double getMinIncidenceCount()

setMinIncidenceCount

public void setMinIncidenceCount(double d)

getMonteCarloRejectionCount

public double getMonteCarloRejectionCount()

setMonteCarloRejectionCount

public void setMonteCarloRejectionCount(double d)

getRealMonteCarloSampleSize

public double getRealMonteCarloSampleSize()

setRealMonteCarloSampleSize

public void setRealMonteCarloSampleSize(double d)

getStatType

public int getStatType()

setStatType

public void setStatType(int i)

getMinPointCount

public int getMinPointCount()

setMinPointCount

public void setMinPointCount(int i)

getBootstrapSampleSize

public int getBootstrapSampleSize()

setBootstrapSampleSize

public void setBootstrapSampleSize(int i)

getMonteCarloSampleSize

public int getMonteCarloSampleSize()

setMonteCarloSampleSize

public void setMonteCarloSampleSize(int i)

getTestType

public int getTestType()

setTestType

public void setTestType(int i)

getMultipleTestReruns

public int getMultipleTestReruns()

setMultipleTestReruns

public void setMultipleTestReruns(int i)

getCounts

public int getCounts()

setCounts

public void setCounts(int i)

writeParameters

public void writeParameters(java.io.File file)
                     throws java.io.IOException,
                            java.io.FileNotFoundException