GENESIS_Miscarriage

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uk.ac.leeds.ccg.andyt.projects.genesis.society.demography
Class GENESIS_Miscarriage

java.lang.Object
  uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType
      uk.ac.leeds.ccg.andyt.projects.genesis.society.demography.GENESIS_Miscarriage

All Implemented Interfaces:: java.io.Serializable

public class GENESIS_Miscarriage
extends uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType
implements java.io.Serializable
extends uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType
implements java.io.Serializable

A class for storing and handling information about Miscarriage in a demographic simulation. In the first implementation, only two values for miscarriage were used: Early Pregnancy Loss (EPL) rate - the proportion of pregnancies that were lost in the first 42 days of pregnancy (early models ran with a value of 0.25 or 1 in 4); and, Clinical Miscarriage (CM) rate - the proportion of pregnancies that were lost from 42 days up to pregnancy term (early models ran with a value of 0.08 or 2 in 25 - which now seems somewhat high). (In the initial implementation, pregnancy term was fixed at 266 days when in reality it varies about this date). For more information about miscarriage see: http://en.wikipedia.org/wiki/Miscarriage (Accessed on 2010-04-23) http://en.wikipedia.org/w/index.php?title=Miscarriage&oldid=384978346 GENESIS_Miscarriage extends MiscarriageType which handles the XML input and output. GENESIS_Miscarriage holds other fields and methods that are used in simulation models. The class is serializable so that the entire instance can swapped to and from disk.

See Also:: Serialized Form

Field Summary
`java.util.TreeMap<GENESIS_AgeBound,java.math.BigDecimal>`	`_DailyClinicalMiscarriageAgeBoundProbability_TreeMap` For storing ageBound specific probabilities.
`java.util.TreeMap<GENESIS_AgeBound,java.math.BigDecimal>`	`_DailyEarlyPregnancyLossAgeBoundProbability_TreeMap` For storing ageBound specific probabilities.
`GENESIS_Environment`	`_GENESIS_Environment` GENESIS_Environment reference
`static int`	`_NumberOfDaysExpectedInPregnancyStageLate_int` For storing the number of days expected in early stage pregnancy.

Fields inherited from class uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType
`clinicalMiscarriageAgeRate, earlyPregnancyLossAgeRate, expectedNumberOfDaysInFullTermPregnancy, numberOfDaysInEarlyPregnancy`

Constructor Summary
`GENESIS_Miscarriage()`
`GENESIS_Miscarriage(GENESIS_Environment a_GENESIS_Environment)`
`GENESIS_Miscarriage(GENESIS_Environment a_GENESIS_Environment, java.io.File miscarriage_File)`
`GENESIS_Miscarriage(GENESIS_Environment a_GENESIS_Environment, uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType a_MiscarriageType)`
`GENESIS_Miscarriage(GENESIS_Miscarriage a_Miscarriage)`

Method Summary
`void`	`formatData(java.io.File directory)`
`java.util.List<uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.common.AgeBoundRate>`	`getClinicalMiscarriageAgeRate()`
`java.util.List<uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.common.AgeBoundRate>`	`getEarlyPregnancyLossAgeRate()`
`static java.util.logging.Logger`	`getLogger()`
`java.lang.Long`	`getMaxAgeYears()`
`java.lang.Long`	`getMinAgeYears()`
`double`	`getNumberOfDaysInLatePregnancy_double()`
`protected void`	`init_DailyClinicalMiscarriageProbability_TreeMap()`
`protected void`	`init_DailyEarlyPregnancyLossProbability_TreeMap()`
`protected void`	`init_NumberOfDaysInLateFullTermPregnancy_int()`
`static void`	`main(java.lang.String[] args)`
`void`	`processCSVtoXML(java.io.File miscarriageRate_File, GENESIS_Mortality mortality)`
`static void`	`run(java.lang.String[] args, java.io.File directory)`
`static void`	`test(java.lang.String[] args, java.io.File directory)`
`void`	`updateLists()` updates genderAgePopulation using _FemaleAgeBoundPopulationCount_TreeMap and _MaleAgeBoundPopulationCount_TreeMap
`void`	`writeToCSV(java.io.File a_File)`
`void`	`writeToXML(java.io.File a_File)`

Methods inherited from class uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.miscarriage.MiscarriageType
`getExpectedNumberOfDaysInFullTermPregnancy, getNumberOfDaysInEarlyPregnancy, setExpectedNumberOfDaysInFullTermPregnancy, setNumberOfDaysInEarlyPregnancy`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Field Detail

_GENESIS_Environment

public transient GENESIS_Environment _GENESIS_Environment

GENESIS_Environment reference

_NumberOfDaysExpectedInPregnancyStageLate_int

public static int _NumberOfDaysExpectedInPregnancyStageLate_int

For storing the number of days expected in early stage pregnancy. In first implementation, this value was fixed at 42 days.

_DailyEarlyPregnancyLossAgeBoundProbability_TreeMap

public java.util.TreeMap<GENESIS_AgeBound,java.math.BigDecimal> _DailyEarlyPregnancyLossAgeBoundProbability_TreeMap

For storing ageBound specific probabilities. The keys are ages in years and the values represent the rate of a pregnant female in early stage pregnancy (<42 days) experiencing a miscarriage on a day.

_DailyClinicalMiscarriageAgeBoundProbability_TreeMap

public java.util.TreeMap<GENESIS_AgeBound,java.math.BigDecimal> _DailyClinicalMiscarriageAgeBoundProbability_TreeMap

For storing ageBound specific probabilities. The keys are ages in years and the values represent the rate of a pregnant female in late stage pregnancy (42 to 266 days) experiencing a miscarriage on a day.

Constructor Detail