uk.ac.leeds.ccg.andyt.projects.genesis.process
Class Compare_GENESIS_DemographicModel

java.lang.Object
  uk.ac.leeds.ccg.andyt.projects.genesis.process.Abstract_GENESIS_Model
      uk.ac.leeds.ccg.andyt.projects.genesis.process.Compare_GENESIS_DemographicModel

All Implemented Interfaces:

java.io.Serializable

public class Compare_GENESIS_DemographicModel
extends Abstract_GENESIS_Model

A class to generate a society. Designed so that the population can be optionally and where appropriate, stored on file. This should scale to larger populations although disk IO speed may be an issue...

See Also:

Serialized Form

Field Summary

Fields inherited from class uk.ac.leeds.ccg.andyt.projects.genesis.process.Abstract_GENESIS_Model

_Directory, _GENESIS_AgentCollectionManager, _GENESIS_Environment, _HandleOutOfMemoryError, _ImageExporter, _InitialRandomSeed, _Input_Parameter_File, _NextRandomSeed, _RandomArray, _RandomSeed, _RandomSeedIncrement, _ResultDataDirectory_File, executorService

Constructor Summary

Compare_GENESIS_DemographicModel()

Method Summary

protected void	addResultToCompare(java.io.File resultToCompare, java.io.File resultToCompareBase, java.lang.String fileSeparator) Updates resultsToCompare_TreeMap to include resultToCompare mapping in the pseudoRandomNumberSeed from the metadata directory as the key for the map.
void	compare(java.io.File a_File, java.io.File b_File) Compares simulation results in file a_File with result in File b_File and reports differences via the report(String) method.
java.io.File	compare(java.lang.String fileSeparator, java.lang.String underscore) Compare all results in resultsToCompare_TreeMap using getSimilarity(String,File,File,String) The File location of the result with the closest similarity to another estimate (theoretically expected estimate based on estimated mid-year populations) is returned.
java.math.BigDecimal	compareFertility(GENESIS_Fertility inputFertility_Fertility, GENESIS_Fertility outputFertility_Fertility)
java.math.BigDecimal	compareMortality(GENESIS_Mortality inputMortality_Mortality, GENESIS_Mortality outputMortality_Mortality)
void	doGenesisSimulatorRun(java.lang.String[] args, java.lang.String fileSeparator, java.lang.String underscore) This is for grid comparison runs.
void	doLocalPCRun(java.lang.String[] args, java.lang.String fileSeparator, java.lang.String underscore)
void	fertilityOutput(java.lang.String areaCode, java.io.File resultDirectory, java.lang.String title, java.lang.String format, int dataWidth, int dataHeight, java.lang.String xAxisLabel, java.lang.String yAxisLabel, boolean drawOriginLinesOnPlot, int ageIntervals, int startAgeOfEndYearInterval, java.lang.Long minAgeYears, java.lang.Long maxAgeYears, int decimalPlacePrecisionForCalculations, int decimalPlacePrecisionForDisplay, java.math.RoundingMode roundingMode, long range, long highestLeaf, long l, java.lang.String partFilename)
protected void	generateComparisonPlots()
uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.metadata.MetadataType	getMetadataForResult(java.io.File resultDirectory, java.lang.String underscore)
java.math.BigDecimal	getSimilarity(java.lang.String fileSeparator, java.io.File parameters_File, java.io.File base_File, java.lang.String underscore)
long	getStartYearForResult(java.io.File resultDirectory, java.lang.String underscore)
static void	main(java.lang.String[] args)
void	miscarriageOutput(java.lang.String areaCode, java.io.File resultDirectory, java.lang.String title, java.lang.String format, int dataWidth, int dataHeight, java.lang.String xAxisLabel, java.lang.String yAxisLabel, boolean drawOriginLinesOnPlot, int ageIntervals, int startAgeOfEndYearInterval, java.lang.Long minAgeYears, java.lang.Long maxAgeYears, int decimalPlacePrecisionForCalculations, int decimalPlacePrecisionForDisplay, java.math.RoundingMode roundingMode, long range, long highestLeaf, long l, java.lang.String partFilename)
void	mortalityOutput(java.lang.String areaCode, java.io.File resultDirectory, java.lang.String title, java.lang.String format, int dataWidth, int dataHeight, java.lang.String xAxisLabel, java.lang.String yAxisLabel, boolean drawOriginLinesOnPlot, int ageIntervals, int startAgeOfEndYearInterval, java.lang.Long minAgeYears, java.lang.Long maxAgeYears, int decimalPlacePrecisionForCalculations, int decimalPlacePrecisionForDisplay, java.math.RoundingMode roundingMode, long range, long highestLeaf, long l, java.lang.String partFilename)
void	popOutput(java.lang.String areaCode, java.io.File resultDirectory, java.lang.String title, java.lang.String format, int dataWidth, int dataHeight, java.lang.String xAxisLabel, java.lang.String yAxisLabel, boolean drawOriginLinesOnPlot, int ageIntervals, int startAgeOfEndYearInterval, java.lang.Long minAgeYears, java.lang.Long maxAgeYears, int decimalPlacePrecisionForCalculations, int decimalPlacePrecisionForDisplay, java.math.RoundingMode roundingMode, long range, long highestLeaf, long l, java.lang.String partFilename)

Methods inherited from class uk.ac.leeds.ccg.andyt.projects.genesis.process.Abstract_GENESIS_Model

get_NextRandom, get_NextRandomSeed, get_Random, get_RandomArray, get_RandomArray, get_RandomArrayMinLength, getExecutorService, getFileThatExists, getLogger, init_Environment, init_RandomArrayMinLength, log

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Compare_GENESIS_DemographicModel

public Compare_GENESIS_DemographicModel()

Method Detail

main

public static void main(java.lang.String[] args)

doGenesisSimulatorRun

public void doGenesisSimulatorRun(java.lang.String[] args,
                                  java.lang.String fileSeparator,
                                  java.lang.String underscore)
                           throws java.io.IOException

This is for grid comparison runs. In this case, all the results to be compared are in a directory containing other data so the. These results all start with the name "output" and so this is used to filter for these results which are then dug into to find a more specific file location within. It is assumed that there is only one result output per result, i.e. the output is not a multiple run.

Parameters:

args - args[0] is a directory location containing the outputs to be compared. These should be the only files or directories with names starting with the string "output" args[1] is the location that a results file comparison.out will be written.

Throws:

java.io.IOException

addResultToCompare

protected void addResultToCompare(java.io.File resultToCompare,
                                  java.io.File resultToCompareBase,
                                  java.lang.String fileSeparator)

Updates resultsToCompare_TreeMap to include resultToCompare mapping in the pseudoRandomNumberSeed from the metadata directory as the key for the map. Generic_StaticIO.recursiveFileList(resultToCompareBase, 2) is reported if resultToCompareBase is not null.

Parameters:

resultToCompare -

resultToCompareBase -

fileSeparator -

doLocalPCRun

public void doLocalPCRun(java.lang.String[] args,
                         java.lang.String fileSeparator,
                         java.lang.String underscore)
                  throws java.io.IOException

Parameters:

args - args[0] is the directory containing the results to compare args[1] is the directory where the comparison.out file will be written

Throws:

java.io.IOException

generateComparisonPlots

protected void generateComparisonPlots()

popOutput

public void popOutput(java.lang.String areaCode,
                      java.io.File resultDirectory,
                      java.lang.String title,
                      java.lang.String format,
                      int dataWidth,
                      int dataHeight,
                      java.lang.String xAxisLabel,
                      java.lang.String yAxisLabel,
                      boolean drawOriginLinesOnPlot,
                      int ageIntervals,
                      int startAgeOfEndYearInterval,
                      java.lang.Long minAgeYears,
                      java.lang.Long maxAgeYears,
                      int decimalPlacePrecisionForCalculations,
                      int decimalPlacePrecisionForDisplay,
                      java.math.RoundingMode roundingMode,
                      long range,
                      long highestLeaf,
                      long l,
                      java.lang.String partFilename)

miscarriageOutput

public void miscarriageOutput(java.lang.String areaCode,
                              java.io.File resultDirectory,
                              java.lang.String title,
                              java.lang.String format,
                              int dataWidth,
                              int dataHeight,
                              java.lang.String xAxisLabel,
                              java.lang.String yAxisLabel,
                              boolean drawOriginLinesOnPlot,
                              int ageIntervals,
                              int startAgeOfEndYearInterval,
                              java.lang.Long minAgeYears,
                              java.lang.Long maxAgeYears,
                              int decimalPlacePrecisionForCalculations,
                              int decimalPlacePrecisionForDisplay,
                              java.math.RoundingMode roundingMode,
                              long range,
                              long highestLeaf,
                              long l,
                              java.lang.String partFilename)

mortalityOutput

public void mortalityOutput(java.lang.String areaCode,
                            java.io.File resultDirectory,
                            java.lang.String title,
                            java.lang.String format,
                            int dataWidth,
                            int dataHeight,
                            java.lang.String xAxisLabel,
                            java.lang.String yAxisLabel,
                            boolean drawOriginLinesOnPlot,
                            int ageIntervals,
                            int startAgeOfEndYearInterval,
                            java.lang.Long minAgeYears,
                            java.lang.Long maxAgeYears,
                            int decimalPlacePrecisionForCalculations,
                            int decimalPlacePrecisionForDisplay,
                            java.math.RoundingMode roundingMode,
                            long range,
                            long highestLeaf,
                            long l,
                            java.lang.String partFilename)

fertilityOutput

public void fertilityOutput(java.lang.String areaCode,
                            java.io.File resultDirectory,
                            java.lang.String title,
                            java.lang.String format,
                            int dataWidth,
                            int dataHeight,
                            java.lang.String xAxisLabel,
                            java.lang.String yAxisLabel,
                            boolean drawOriginLinesOnPlot,
                            int ageIntervals,
                            int startAgeOfEndYearInterval,
                            java.lang.Long minAgeYears,
                            java.lang.Long maxAgeYears,
                            int decimalPlacePrecisionForCalculations,
                            int decimalPlacePrecisionForDisplay,
                            java.math.RoundingMode roundingMode,
                            long range,
                            long highestLeaf,
                            long l,
                            java.lang.String partFilename)

compare

public java.io.File compare(java.lang.String fileSeparator,
                            java.lang.String underscore)

Compare all results in resultsToCompare_TreeMap using getSimilarity(String,File,File,String) The File location of the result with the closest similarity to another estimate (theoretically expected estimate based on estimated mid-year populations) is returned.

compareMortality

public java.math.BigDecimal compareMortality(GENESIS_Mortality inputMortality_Mortality,
                                             GENESIS_Mortality outputMortality_Mortality)

Parameters:

inputMortality_Mortality -

outputMortality_Mortality -

Returns:

SSE

compareFertility

public java.math.BigDecimal compareFertility(GENESIS_Fertility inputFertility_Fertility,
                                             GENESIS_Fertility outputFertility_Fertility)

Parameters:

inputFertility_Fertility -

outputFertility_Fertility -

Returns:

SSE

getSimilarity

public java.math.BigDecimal getSimilarity(java.lang.String fileSeparator,
                                          java.io.File parameters_File,
                                          java.io.File base_File,
                                          java.lang.String underscore)

compare

public void compare(java.io.File a_File,
                    java.io.File b_File)

Compares simulation results in file a_File with result in File b_File and reports differences via the report(String) method.

getStartYearForResult

public long getStartYearForResult(java.io.File resultDirectory,
                                  java.lang.String underscore)

getMetadataForResult

public uk.ac.leeds.ccg.andyt.projects.genesis.io.schema.metadata.MetadataType getMetadataForResult(java.io.File resultDirectory,
                                                                                                   java.lang.String underscore)